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I'd originally planned on using DCC control for the signal lights on the layout, but then came across the relative simplicity of C/MRI in combination with JMRI. This allowed me to set the individual signal lights based on how a turnout or route was set in JMRI.
Skip to around 21:39 in the video to jump over initial attempts at DCC control and exploration of C/MRI. At this point in the video, I'm set on using 74HC595 shift registers with an Arduino and C/MRI.
The Arduino code and written explanation of how JMRI and C/MRI are configured can be found here - github.com/fouldsy/arduino-jm...