How to Run PharmCAT

Рет қаралды 571

Күн бұрын

Run your very first PharmCAT.
For more information, please visit pharmcat.org/.
To follow PharmCAT and receive any latest news, please consider subscribing to this channel or our PharmCAT email updates: pharmgkb.us10.list-manage.com....
0:00 Intro
0:08 Download PharmCAT
1:14 Requirements
2:10 Download the Example VCF
2:29 Run the PharmCAT VCF Preprocessor
4:33 Run PharmCAT
4:35 More on the PharmCAT Website

Пікірлер: 4

@user-ro2ib1tz4h 6 ай бұрын

Hello Thank you for the tutorial. But The pharmcat-2.8.2-all.jar file does not exist github anymore. Is there any alternative to this part of the pipeline? has something changed in Pharmact pipeline? I really appreciate if you can guide me on this matter.

@PharmgkbOrg 6 ай бұрын

All releases are available on GitHub. Make sure you click on the "Releases" link instead of a specific version. Here's a direct link to 2.8.2: github.com/PharmGKB/PharmCAT/releases/tag/v2.8.2

@AtanukumarDutta Ай бұрын

Getting the following error while executing the command - python preprocessor/pharmcat_vcf_preprocessor.py -vcf pharmcat_positions_2.8.2.vcf File "preprocessor/pharmcat_vcf_preprocessor.py", line 103 script_dir: Path = Path(globals().get("__file__", "./_")).absolute().parent ^ SyntaxError: invalid syntax

@PharmgkbOrg Ай бұрын

For help, please open an issue at github.com/PharmGKB/PharmCAT. You will also need to provide more information. For example, version of python are you using?