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How to Treat Dogs for Diarrhea. Part of the series: Dog Health. If a dog has diarrhea, a veterinarian will typically look at a fecal sample to see if there is a parasite or an abnormal overgrowth of bacteria. Learn about antibiotics used to treat diarrhea in dogs with help from a veterinarian in this free video on treating dogs for diarrhea. Read more: www.ehow.com/vi...