Using prefetch and fast(er)q-dump, download and convert .sra files to .fastq files.
Пікірлер: 9
@katerinapetelova67062 жыл бұрын
That was great. Hope you will come back, because your videos are really helpful and on point.
@dananjanirathnayake86533 жыл бұрын
This kind of videos are really rare. Please keep going and Thank you very much ❤️💐
@anguscampbell30203 жыл бұрын
thanks you're amazing!
@pizmen249 ай бұрын
I am watching after 4 years. I was hoping to see the folders where the files are downloaded.
@andrelucena32324 жыл бұрын
why every function (fastq-dump, fasterq-dump) are so fast executing for you? here it lasts several minutes
@kishorkumarsarker82703 жыл бұрын
Thanks. I have downloaded SRA toolkit. How to configure it? And using prefetch command, "Download of some files was skipped because they are too large You can change size download limit by setting --min-size and --max-size command line arguments" what i am receiving here.Can you please help me to resolve this issue?
@anguscampbell30203 жыл бұрын
For anyone who is looking for the SRA toolkit here you go: trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software
@taifshah90033 жыл бұрын
very casual clip
@alvarodelamorapena-mielapi22563 жыл бұрын
Thanks for your email. I am still having questions about the bioproject that I want to download (PRJNA406998). The tool that they used is Illumina, I tried to download it but I couldn’t. Also, where do you write the codes? I am using windows and when I open “command prompt” to write the code (e.g. “ ̴$ ..."), the computer says that the command is not recognized. Do you have an email address, please? Thanks.