Having laboured through 3 other YT tutorials on this exact same topic, I can say this is far and away the best tutorial. I am left wondering if the other presenters actually knew what they were talking about. This tutorial is authoritative, straightforward and well presented - excellent stuff. Thank you.

It is informative and very easy to follow. Thanks

Very informative lecture.

Very well explained sir.

How do you know what net charge to add to the ligand during preparation? Should it always be 0? For example, I have downloaded ATP from PubChem. It has several deprotonated phosphate groups, do I need to specify in Chimera the negative3 charge? Thank you!

nice

Thanks very much for this tutorial professor. Please Sir after doing redocking, if your ligand aligns with the cocrystallised ligand but doesn't have a good RMSd value which parameters can you modify to have a perfect alignment which will lead to a good RMSd value? Thanks

Sir why I can't paste the smiles from pubchem to ucsf chimera

thanks for this tutorial. can tell how to calculate RMSD value of redocked complex ? if when calculating rmsd value you get a value lower than 1 say 0.235 is it bad for a docking experiment?

Thank you. Please how can I get my binding site for command prompt

There is an error shown - [Error 13] permission denied: complex.pdbqt. How to rectify???

How download auto dock vina.last step auto dock does no work.for window 10

I love you

hello sir, I am using MacBook Air M1 which MGL tools is not available, can I use UCSF chimera as an alternative for MGL tools?

actual docking: 10:37