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Quantification of western blot using imageJ for beginners | western blot quantification | imagej |

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Biology Lectures

Biology Lectures

Күн бұрын

Пікірлер: 71
@howtoneuro5930
@howtoneuro5930 2 жыл бұрын
I wish I had this explanation a long time ago! Thank you for sharing this knowledge. Doing experiments is cool, but analyzing data is always more tricky!
@BiologyLectures
@BiologyLectures 2 жыл бұрын
You're very welcome!
@antarasengupta8614
@antarasengupta8614 6 ай бұрын
Thank you! It was very clear and systematic-easy to understand and follow.
@BiologyLectures
@BiologyLectures 6 ай бұрын
You're very welcome!
@kobbyblaqboi4243
@kobbyblaqboi4243 2 жыл бұрын
Final ratio was rather Protein r/ actin r I think. Good video! thank you.
@BiologyLectures
@BiologyLectures 2 жыл бұрын
Thank you very much for your comment. In our video also, we divide protein of interest by actin.
@ItsDeeable
@ItsDeeable 2 жыл бұрын
Sorry, just need a clarification - do you divide Actin Ratio by Protein Ratio or vice versa? You wrote down Actin R/Protein R but do otherwise. Thanks!
@mallitkim
@mallitkim 9 ай бұрын
Protein/Actin it is :)
@SM-xn9bv
@SM-xn9bv 11 ай бұрын
Excellent job!!! Very clear and consize! Many thanks!
@BiologyLectures
@BiologyLectures 11 ай бұрын
You are most welcome 🤗
@dikshyapanthi7681
@dikshyapanthi7681 2 жыл бұрын
Excellent explanation sir . Thank you very much for your video
@BiologyLectures
@BiologyLectures 2 жыл бұрын
You are most welcome
@job506
@job506 5 ай бұрын
Many thanks, once again. Please, how do I obtain the relative intensity (Protein expression) for samples if the control does not have any protein expression?
@AnnieNaeem
@AnnieNaeem 2 жыл бұрын
Thank you so much for making it easy to understand.
@BiologyLectures
@BiologyLectures 2 жыл бұрын
You are most welcome. Please subscribe our channel to support us.
@markrobinson9676
@markrobinson9676 Жыл бұрын
thank you for saving my life. awesome.
@BiologyLectures
@BiologyLectures Жыл бұрын
Happy to help!
@aynalsaba7982
@aynalsaba7982 11 ай бұрын
Thank you so much for sharing your knowledge with us. I really appreciate your work. Sir, i have one query. You have taken 1 experimental control for explaining the analysis process. Sir, i have done western blot on clinical samples and i have taken 3 control samples and 3 patient samples for my western blot process. So the thing is how will i take the ratio for those 3 controls?
@BiologyLectures
@BiologyLectures 11 ай бұрын
You can calculate the ratio for three controls and take the average to show the comparison between your control samples and experimental samples.
@aynalsaba7982
@aynalsaba7982 11 ай бұрын
@@BiologyLectures again thank you so much sir. I was thinking to take average area of three control samples and then calculating the ratios but now I got the answer. I'm really grateful😊
@shwetab8790
@shwetab8790 Жыл бұрын
Excellent explanation. Thanks a lot.
@BiologyLectures
@BiologyLectures Жыл бұрын
You are welcome!
@mvbs824
@mvbs824 Жыл бұрын
Thank you for the clear explanation! I had one question, what if my CTRL value is 0, how do I now calculate the ratio's and perform the normalisation?
@BiologyLectures
@BiologyLectures Жыл бұрын
Could you please elaborate further ? Are you talking about loading control or negative control ?
@mvbs824
@mvbs824 Жыл бұрын
@@BiologyLectures A negative CTRL, so I have a treatment that upregulates a specific protein, and in my CTRL, there is no band visible for this protein, where there is a drastic increaase as a result of the treatment.
@livinghope8039
@livinghope8039 Жыл бұрын
Thanx for responding my question! I subscrbed, liked + shared your video
@BiologyLectures
@BiologyLectures Жыл бұрын
Thank you very much for the support.
@Hari788
@Hari788 2 жыл бұрын
Excellent explanation sir. This is what I needed
@BiologyLectures
@BiologyLectures 2 жыл бұрын
Glad it helped
@user-gl4zx1yd4d
@user-gl4zx1yd4d 7 ай бұрын
Thank you! Helped a lot
@BiologyLectures
@BiologyLectures 7 ай бұрын
You are most welcome
@jackbilotto4698
@jackbilotto4698 Жыл бұрын
Hi thanks for the video. If my control protein and protein of interest are in seperate images will the contrast settings affect the result?
@BiologyLectures
@BiologyLectures Жыл бұрын
If you have an equal amount of samples loaded in the same order in both images, contrast settings won't affect. But if the samples are different and loaded in a different order, it will affect. Ideally, it is better to have loading control and protein of interest in the same image. We won't recommend having loading control and protein of interest in the different pictures.
@raquelhanadulset
@raquelhanadulset 2 жыл бұрын
I did a western blot with n=4 for both control and treatment to observe the expression of a protein of interest and then normalise against housekeeping gene .. how do I plot the data in this case? Do I calculate the ratios for each n individually? how do I carry out a paired student t-test with ratios o does it need to be with the means of the area under the curve calculated with image j? I would appreciate your help. thanks a lot!!
@BiologyLectures
@BiologyLectures 2 жыл бұрын
Please calculate the ratios for each of your control and sample as described in the video. So, you will have four ratios each for sample and control. Then just put these values in excel and do the paired student t test or you can also perform the test in graphpad. Links below Excel: kzfaq.info/get/bejne/Z79ygLWHxNKWaWg.html Graphpad: kzfaq.info/get/bejne/lc-cZ6yarL_beWg.html
@jagdeepsingh1515
@jagdeepsingh1515 2 жыл бұрын
Thank you for such a beautifully explained video.
@BiologyLectures
@BiologyLectures 2 жыл бұрын
Glad it was helpful!
@ingridtamura1128
@ingridtamura1128 2 жыл бұрын
I can't drag the rectangles just like you did. I tried so many times already
@BiologyLectures
@BiologyLectures 2 жыл бұрын
If you are using laptop, please press and hold the left on mouse and drag it.
@huseyinkocakusak
@huseyinkocakusak 2 жыл бұрын
Very good explanation. Thank you!
@BiologyLectures
@BiologyLectures 2 жыл бұрын
Glad it was helpful!
@job506
@job506 Жыл бұрын
Many thanks! I observed that some faint bands were entirely eliminated due to the adjustments of brightness/contract; how can you account for the bands. What are they, please?
@BiologyLectures
@BiologyLectures Жыл бұрын
If you want to include faint bands also, then I would suggest to do less brightness and contrast adjustment in a way that they are still there and incorporate those in analysis.
@job506
@job506 Жыл бұрын
@@BiologyLectures Thank you. I just wanted to be sure that they are bands of expressed proteins.
@BiologyLectures
@BiologyLectures Жыл бұрын
@@job506 You are most welcome.
@roxanne3956
@roxanne3956 2 жыл бұрын
At 4:22 you said there was no need for you to adjust the lanes. What I get are lanes that "don't touch the zero" so two bands have the same curve. How do I separate them?
@BiologyLectures
@BiologyLectures 2 жыл бұрын
To seperate the lanes please draw the line and make it touch the zero.
@vanesamattera2505
@vanesamattera2505 Жыл бұрын
Thank you for the video, how do you tag the Y axis in the plot?. Is it ok to label it like: Protein/actin (relative to control)?.
@BiologyLectures
@BiologyLectures Жыл бұрын
Yes you can label like the way you mentioned. Or you may label like Relative band intensity (protein/actin) normalized to control.
@mrblackmamba117
@mrblackmamba117 2 жыл бұрын
Life saver. Thank you so much sir. Subscribed.
@BiologyLectures
@BiologyLectures 2 жыл бұрын
Thank you for your kind words. Thank you very much for the subscription.
@tzed2219
@tzed2219 8 ай бұрын
Very helpful!!
@BiologyLectures
@BiologyLectures 8 ай бұрын
Thank you very much 😊
@donkeyally
@donkeyally 2 жыл бұрын
If we quantify western blot like this, our Y-axis should label relative expression, right?
@BiologyLectures
@BiologyLectures 2 жыл бұрын
Yes, we can label Y axis as relative expression
@JustFelicia
@JustFelicia Жыл бұрын
hi so if i do it like this, i do not need to subtract the background?
@BiologyLectures
@BiologyLectures Жыл бұрын
Yes you don't need to.
@haleyluu9941
@haleyluu9941 2 жыл бұрын
What if I only am blotting for 1 protein? How would I analyze this data? I did a WB on A549 cells, probing for beta-actin.
@BiologyLectures
@BiologyLectures 2 жыл бұрын
Even if you are detecting only one protein, you can use the same method to quantify. perform the calulation for beta actin only. During calculation, normalize against your control samples just as shown in the video.
@rayanehedna6228
@rayanehedna6228 Жыл бұрын
I don't think it's a good thing to play on intensities like that with contrast
@BiologyLectures
@BiologyLectures Жыл бұрын
As long as you are playing with both the control and your protein of interest, it is fine.
@mohammedalsaegh8399
@mohammedalsaegh8399 2 жыл бұрын
So informative...thank you
@BiologyLectures
@BiologyLectures 2 жыл бұрын
Glad it was helpful!
@sanja5377
@sanja5377 Жыл бұрын
Thank you!
@BiologyLectures
@BiologyLectures Жыл бұрын
You are most welcome.
@nihanverimli2108
@nihanverimli2108 Жыл бұрын
Thank you
@BiologyLectures
@BiologyLectures Жыл бұрын
You are most welcome 🤗
@abhang4623
@abhang4623 2 жыл бұрын
any reffrence to this technique, pls provide as early as possible
@BiologyLectures
@BiologyLectures 2 жыл бұрын
In this paper, we utilized this quantification approach. pubmed.ncbi.nlm.nih.gov/34453962/
@abhang4623
@abhang4623 2 жыл бұрын
@@BiologyLectures thanks for this early response, greatful for this..
@BiologyLectures
@BiologyLectures 2 жыл бұрын
@@abhang4623 You are most welcome.
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