R package reviews {gtsummary} Publication-Ready Tables of Data, Statistical Tests and Models!

  Рет қаралды 23,826

yuzaR Data Science

yuzaR Data Science

Күн бұрын

{gtsummary} package helps to easily produce publication-ready & beautifully formatted summary tables of Data, Statistical Tests and Models! It calculates tons of statistics and has a beautiful design by default, but you can customize every aspect of your table and export it as a picture or MS Word format.
If you only want the code (or want to support me), consider join the channel (join button below any of the videos), because I provide the code upon members requests.
Enjoy! 🥳

Пікірлер: 141
@rodrigonehara3143
@rodrigonehara3143 Жыл бұрын
I have no more words to say how useful your videos are. Have a great day, Sir.
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
Glad it is useful! Cheers
@warrenmalambo578
@warrenmalambo578 Жыл бұрын
Your videos are always amazing. I've been using the gtsummary package but hadn't explored the tbl-merge function. Absolutely love it. Will explore more
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
Glad it's useful! Thanks you for nice feedback and for watching! If you think, it will be useful for others, feel free to share the video. Cheers
@igordemetriusalencar5861
@igordemetriusalencar5861 Жыл бұрын
Thank you! That's what I was looking for! I have a statistical analysis to do and this will help me to present it in a simple, precise, and informative way.
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
Glad it was helpful!
@muhammedhadedy4570
@muhammedhadedy4570 Жыл бұрын
I came across this KZfaq channel by chance. How AMAZING your channel is!. Sunmarizing such an important package in 12 minutes (in FULL DETAILS), with such an easy and confident way is absolute brilliance. I'm definitely gonna watch every single video in your channel. From the bottom of my heart, thank you for your great work.
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
Thanks a ton for such a positive feedback! gtsummary is certainly one of my favourite packages and is incredibly useful in everyday work! I hope you like other videos on other packages too! :) Thanks for watching!
@SergioUribe
@SergioUribe Жыл бұрын
awesome presentation. Big fan of the gtsummary package and now fan of your channel, kudos!
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
Much appreciated! And thanks for watching!
@so4ragb
@so4ragb Жыл бұрын
by far the best video I have seen on gtsummary. And thanks for those Uni/multi var results, which I had requested.
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
Most welcome 😊 Thanks for cool request and especially for watching!
@Lenman55
@Lenman55 Жыл бұрын
Your videos and blog are extremly helpful for me as a psych student working in research. Thank you!
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
Glad it's useful for more then me ;) Thanks for your nice feedback, it means a lot to me! And motivates to continue. And thanks for watching!
@MannyBernabe
@MannyBernabe Жыл бұрын
Love the editing. Well done! Great content too!
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
Thanks for feedback and for watching!
@donaldudah8097
@donaldudah8097 4 ай бұрын
Great Job!! Thank you, sir.
@yuzaR-Data-Science
@yuzaR-Data-Science 4 ай бұрын
Glad it was helpful! Thanks for watching!
@ramoda13
@ramoda13 Ай бұрын
Amazing video. Thank you.
@yuzaR-Data-Science
@yuzaR-Data-Science Ай бұрын
Glad you liked it! Thanks for watching!
@abdulbouraa4529
@abdulbouraa4529 Жыл бұрын
Thank you so much for your video !!!!
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
You are welcome 🙏 thanks for watching!
@niceday2015
@niceday2015 Жыл бұрын
Thank for the nice editting and informative video.
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
You are very welcome! Thanks you for watching!
@fishfish20
@fishfish20 Жыл бұрын
Be blessed sir. I can't lie, I always come here to get packages. ☺ Thank you sir for the clear explanations.
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
I am glad it's useful. Thanks for watching!
@tjaeg
@tjaeg Жыл бұрын
Congrats. Keep on!
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
Thanks! I'll do my best ;)
@tubihemukamamethodius6952
@tubihemukamamethodius6952 Жыл бұрын
One of the best videos of all time
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
Thanks a ton! :) Glad you enjoyed it. My other videos might also be useful, if you liked this one. Cheers
@statlab_stat.solution
@statlab_stat.solution 11 ай бұрын
Wow!! I am speechless how useful this is.!!!
@yuzaR-Data-Science
@yuzaR-Data-Science 11 ай бұрын
Glad it was helpful! I also love gtsummary and use it everyday. Hope you find the rest of my content useful as well. Thanks for your nice feedback and for watching!
@michaelgreco6740
@michaelgreco6740 Жыл бұрын
This is amazing, ive been working on a university project in r for days now. your video has helped me so much. thank you sir!
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
Hello colleague, I also work at the uni. Glad it helped! Other videos might be useful too, because until now, I only have done videos on things I use every day. Thank you for watching!
@michaelgreco6740
@michaelgreco6740 Жыл бұрын
@@yuzaR-Data-Science hello! thanks for replying. i have looked at your blog and some of your other videos. theres some really good content that will help me with my R studio journey.
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
enjoy ;)
@icefunkdark8555
@icefunkdark8555 Жыл бұрын
thank you for the great video :)
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
You are very welcome! Thanks for watching!
@1986mayday
@1986mayday Жыл бұрын
Nice work. Have shared this video with a few friends, :)
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
Thanks for sharing!
@alexandregeorgelustosa5969
@alexandregeorgelustosa5969 Жыл бұрын
Awesome!
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
Thank you! Cheers!
@doaaguda2783
@doaaguda2783 Жыл бұрын
Really this video helped me a lot, really amazing for the beginners like me. Please if you can make more videos for more functions that do tables in R like summary_factorlist and others
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
Thanks 🙏 I’ll see whether I’ll find enough useful material for another video.
@maximzankevich2513
@maximzankevich2513 Жыл бұрын
Just awesome
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
Glad you liked it!
@staedtler8479
@staedtler8479 7 ай бұрын
I love your videos, very clear, fun to watch and most importantly we learn so much. Thank you so much
@yuzaR-Data-Science
@yuzaR-Data-Science 7 ай бұрын
Happy to hear that! Thanks for your feedback! I look forward to produce more content next year.
@staedtler8479
@staedtler8479 7 ай бұрын
@@yuzaR-Data-Science i look forward to it !
@yuzaR-Data-Science
@yuzaR-Data-Science 7 ай бұрын
@@staedtler8479 👍
@staedtler8479
@staedtler8479 7 ай бұрын
@@yuzaR-Data-Science pardon me, but i would like to ask you a question. If i have a set of categorical variables in my data and i'm trying to conduct a logistic regression using a binary outcome on Y. Is it even possible to have a decent model following such an approach?
@yuzaR-Data-Science
@yuzaR-Data-Science 7 ай бұрын
@@staedtler8479 if you have 0 and 1 as a response variable, then yes, you can do logistic regression. all the other variables are then predictors.
@siriyakcr
@siriyakcr Жыл бұрын
Awesome 😁😁
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
Thanks!
@user-dl5go9tg6g
@user-dl5go9tg6g Ай бұрын
Amazing
@yuzaR-Data-Science
@yuzaR-Data-Science Ай бұрын
Thanks 🙏
@TheDungaga
@TheDungaga 10 ай бұрын
God bless you!
@yuzaR-Data-Science
@yuzaR-Data-Science 10 ай бұрын
Thanks 🙏
@anyijukamark8257
@anyijukamark8257 9 ай бұрын
i have learnt alot in the video, thanks alot teacher i would also want to know how possible it is to add superscripts indicating the statistical difference across and along the table. this is important to me thank you Yury
@yuzaR-Data-Science
@yuzaR-Data-Science 9 ай бұрын
Yeah, it's definitely possible, either with gtsummary, or with gt. I did that once, but couldn't find the script. Have a look at this one: stackoverflow.com/questions/74555622/gtsummary-how-to-add-caption-for-specific-variables Thank you for watching!
@jumamustafaphiri2821
@jumamustafaphiri2821 6 күн бұрын
This takes me two days to do in SPSS. Thank you for saving my time. You just won yourself a subscriber! How do I get the code?
@yuzaR-Data-Science
@yuzaR-Data-Science 6 күн бұрын
Thanks man! Hope the rest of the videos is also useful! I send the code to the members of the channel, thus, join if you wish. It's of coarse not necessary, because youtube is free and you can just stop the video at any moment and write off the code. Kind regards!
@mkklindhardt
@mkklindhardt 15 күн бұрын
I really love your videos. Thnks for all this valuable content and guidelines. Do you have a place where we can find your scripts from your videos?
@yuzaR-Data-Science
@yuzaR-Data-Science 14 күн бұрын
Hi, thanks soo much for your valuable feedback. Sure, I share scripts of the videos, which include code and explanations with the members of the channel. Members just go to the community tab and ask for it. Cheers :)
@diegorada2235
@diegorada2235 Жыл бұрын
Hi! Thank you so much for the video. I am trying to use add_global_p() to a linear model with interactions to a lm with interactions, but it is giving me error. I was wondering what I could do
@yuzaR-Data-Science
@yuzaR-Data-Science 11 ай бұрын
That actually works on my computer: library(gtsummary) m % add_global_p() so, probably some packages need an update
@brazilfootball
@brazilfootball Жыл бұрын
Love these videos! Question: We loose the light gray outlines that separate the variables in the table when saving from R to PNG/word. Is there a way to keep and edit these in the final product?
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
Not that I know of from the top of my head. But the {gt} package has enormous functionality, so I guess you just google the problem and, if it's possible, you'll find a solution quickly. Thanks for your feedback and thank you for watching!
@brazilfootball
@brazilfootball Жыл бұрын
@@yuzaR-Data-Science Thanks again! One solution that worked for me was converting and saving my table with ... %>% as_gt() %>% gt::gtsave(filename = ".png")
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
cool, mate! thanks for sharing! It'll be useful for the community and I'll use it too.
@joshstat8114
@joshstat8114 9 ай бұрын
Great vid, sir! May I request you to create a video about deep learning in R?
@yuzaR-Data-Science
@yuzaR-Data-Science 9 ай бұрын
Great suggestion! I definitely plan to go into modelling and make a few videos on deep learning in R. But since I want to make videos on visualisation first and then on modelling, including all the other classical models first, the DL videos would take a while. Until then, if you still don't know the StatQuest youtube channel, check it out. This channel make tons of videos about them, less with programming, but more for an intuitive understanding. hope that helps. and thank you for watching!
@joshstat8114
@joshstat8114 9 ай бұрын
@@yuzaR-Data-Science which is I already did and it was so entertainingly informative. Thanks to him, I was able to create an LSTM function for time series forecasting similar to nnetar from forecast package.
@yuzaR-Data-Science
@yuzaR-Data-Science 9 ай бұрын
nice! I love Josh Starmers channel.
@joshstat8114
@joshstat8114 9 ай бұрын
@@yuzaR-Data-Science I really appreciate his work. Yours, as well. I hope we can collaborate in the future
@nukenelson
@nukenelson Ай бұрын
Is it possible that alongwith P value we also have Chi Square Statistics value & df value etc in GtSummary table..if yes what's the code
@yuzaR-Data-Science
@yuzaR-Data-Science Ай бұрын
Not straight forward unfortunately. You could create a data frame and use flextable and the export it in word or png
@ambhat3953
@ambhat3953 Жыл бұрын
How helpful is this to use in basic exploratory data analysis representation ? Most of the times, i dont need to publish any stat summary, but just a basic table/pivot table. Does this have table transformation to pivot table ?
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
of coarse! tbl_cross() function, or percentages with tbl_summary() for columns, rows or cells
@ambhat3953
@ambhat3953 Жыл бұрын
@@yuzaR-Data-Science Thanks, will take a look into them
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
@@ambhat3953 you are welcome!
@wagawsendeku7750
@wagawsendeku7750 Жыл бұрын
p %>% + tbl_summary(by = ptys) Error: 'yaml_body' is not an exported object from 'namespace:xfun'
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
Try to install the newest version of the 'xfun' package. Update all the other packages, your R and RStudio. Restart everything, your PC and RStudio
@aram5704
@aram5704 11 ай бұрын
How did u get mutivariable model?
@yuzaR-Data-Science
@yuzaR-Data-Science 11 ай бұрын
Is the code below not part of the video? bm
@user-dl8le5cs6t
@user-dl8le5cs6t 4 ай бұрын
Is there a way I can do this for complex suvrey?
@yuzaR-Data-Science
@yuzaR-Data-Science 4 ай бұрын
actually, yes. but it of coarse depends on the complexity. start with checking out this function "tbl_svysummary", but then browse in internet for more survey functions from gtsummary.
@demigod4504
@demigod4504 10 ай бұрын
Hello. What was the code used to create the object "bm_table"? That is, the multivariate model? Thanks a lot, Sir
@yuzaR-Data-Science
@yuzaR-Data-Science 10 ай бұрын
Yes, correct: bm
@demigod4504
@demigod4504 10 ай бұрын
@@yuzaR-Data-Science Thanks sir, awesome content 😃👍 Keep going!!
@yuzaR-Data-Science
@yuzaR-Data-Science 10 ай бұрын
@@demigod4504 Will do. Thank you for watching!
@keineahnung9828
@keineahnung9828 Жыл бұрын
How can I get trial dataset to practice?
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
There are tons of them! Just load "library(tidyverse)" and google datasets in tidyverse. Viel Spaß!
@ropflpfopfl2555
@ropflpfopfl2555 Жыл бұрын
Yep, this will probably blow my teachers mind lol
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
Plots and tables are all you need;)
@sequoiagiganteum4832
@sequoiagiganteum4832 Жыл бұрын
can u explain this, how i handle it with an seperate outcome column? Because when i build a faktorcombination with the outcome, then plto table. It seems that the package just use the count, not die outcome. The outcome gets a seperate summary.. what is complete useless.
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
sorry, I don't know what do you mean by separate outcome. if you want to do a survival analysis, then look at this: www.danieldsjoberg.com/gtsummary/reference/tbl_survfit.html
@sequoiagiganteum4832
@sequoiagiganteum4832 Жыл бұрын
@@yuzaR-Data-Science im new in R. I have my obersvation column and i have my grouping column. Now i want to know the percentage of the groups based on my oberservation, not on counted of the group column. I dont know hoe i should fix this otherwise than building a df with interact and acast. But this isnt pritty nice. Maybe there is an option in the tbl_summary command. My grouping column have charakters not numeric. the numerics are in the oberservation column
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
I still struggle to understand what you want to calculate. If you have numeric variable, how and why do you want percentage ... of what? you can compare groups and get average of similar of your numeric column. Or you can count groups in categorical column, but you can't get percentage of a numeric column.
@kennethgottfredsen767
@kennethgottfredsen767 Жыл бұрын
Can i rename all the text in the table. Or Can i only rename the labels?
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
sure, it's somewhere inside of the video: - label - changes variable names - missing_text - changes the name of the missing data - modify_header(list( label ~"**Model Outcome**", estimate ~ "**Treatment Coef.**" )) etc. if it's not what you want, just rename things in your table and use gtsummary on top of it
@kennethgottfredsen767
@kennethgottfredsen767 8 ай бұрын
@@yuzaR-Data-Science What about the background color in the table, is that also customizable?
@yuzaR-Data-Science
@yuzaR-Data-Science 8 ай бұрын
@@kennethgottfredsen767 I think it is, I never particularly needed it, but I think that {gt} packages can make it happen. {gtsummary} is build on top of gt, so, you'll most likely find some options online. let me know whether you'll be able to find something on that. it will be useful for the whole community here in comments.
@kennethgottfredsen767
@kennethgottfredsen767 8 ай бұрын
@@yuzaR-Data-Science Yes it is possible! I did find a video on this matter. I'll send you the link once im done testing my code.
@CanDoSo_org
@CanDoSo_org 4 ай бұрын
Could you please show how to make the settings work for pdf file? Many settings do not work in pdf file output.
@yuzaR-Data-Science
@yuzaR-Data-Science 3 ай бұрын
it works in the html very good.pdf, I didn't even try, because it was never needed. and you can export the tables in word or png format. for example become part of the paper. so, the work-around would be to produce a word document with the table of your choise and then create a pdf out of it. cheers
@CanDoSo_org
@CanDoSo_org 3 ай бұрын
@@yuzaR-Data-Science Thanks. But it would be better if it can create a nice pdf table directly.
@yuzaR-Data-Science
@yuzaR-Data-Science 3 ай бұрын
for me PDF or PNG makes no difference, because it's not editable, but PDF can not be added to any other document, while PNG can be converted to PDF easily. cheers
@CanDoSo_org
@CanDoSo_org 3 ай бұрын
@@yuzaR-Data-Science Thanks. That makes sense. But it would be extremely convenient to directly create tables in pdf file. It saves time to copy and paste when we write academic papers. That's why we use Rmarkdown or Quarto markdown. We integrate the codings and literature writings. So we don't need to re-copy and paste when there are any changes or data updates on the tables.
@bervelinlumesa3475
@bervelinlumesa3475 Ай бұрын
Hello Sir. Is it possible to display only one category of the dichotomous variable provided with the "by" parameter. For example I only want to display the percentage of people who said Yes (sport-Oui). library(gtsummary) library(questionr) data("hdv2003") hdv2003 %>% tbl_summary( include = c("sexe", "relig", "relig"), by = "sport", percent = "row", statistic = all_categorical() ~ "{p}%" ) . The objective is that I would subsequently like to combine several tables where in the column I will have the percentages of several variables.
@yuzaR-Data-Science
@yuzaR-Data-Science Ай бұрын
Yes it’s possible. Check out the arguments of the Funktion please yourself, I am away from my computer for a week. And you can combine several tables easily via tbl_merge
@bervelinlumesa3475
@bervelinlumesa3475 Ай бұрын
@@yuzaR-Data-Science Thank you
@bervelinlumesa3475
@bervelinlumesa3475 Ай бұрын
I found modify_column_hide function that can do it
@yuzaR-Data-Science
@yuzaR-Data-Science Ай бұрын
you are very welcome!
@yuzaR-Data-Science
@yuzaR-Data-Science Ай бұрын
cool! thanks for posting "modify_column_hide()" here, it will be beneficial for the whole community. glad, you could solve this one!
@praveenbhoopathi9487
@praveenbhoopathi9487 2 ай бұрын
I am experiencing some difficulty in copying these tables into a word document... therefore, could you please help me in this ?
@yuzaR-Data-Science
@yuzaR-Data-Science 2 ай бұрын
you don't copy them into word, you extract them, which is later in the video fancy_table %>% as_flex_table() %>% save_as_docx(path = "fancy_table.docx")
@praveenbhoopathi9487
@praveenbhoopathi9487 2 ай бұрын
I still havent got this.. tbl_summary(DescripCLSA15T, by = SROH)%>% add_p()%>% add_overall()%>% add_stat_label( label = all_continuous()~"Mean(sd)" This is one such code which is working. How do I export this table to a word document. Kindly help..Pardon me for the inconvenience
@yuzaR-Data-Science
@yuzaR-Data-Science 2 ай бұрын
sure, save your code which worsk as a "fancy_table", then export fancy_table % add_p()%>% add_overall()%>% add_stat_label( label = all_continuous()~"Mean(sd)" fancy_table %>% as_flex_table() %>% save_as_docx(path = "fancy_table.docx") Let me know whether this worked. And by the way watch the video completely to the end, because the solution is in there ;)
@praveenbhoopathi9487
@praveenbhoopathi9487 2 ай бұрын
@@yuzaR-Data-Science Thank you so much. Amazing
@yuzaR-Data-Science
@yuzaR-Data-Science 2 ай бұрын
@@praveenbhoopathi9487 you are very welcome! ;)
@denizgoktas1535
@denizgoktas1535 Жыл бұрын
How to export tables into LaTeX?
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
Described here: www.danieldsjoberg.com/gtsummary/articles/rmarkdown.html
@denizgoktas1535
@denizgoktas1535 Жыл бұрын
@@yuzaR-Data-Science Thanks.
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
@@denizgoktas1535 You are welcome! Thanks for watching!
@arseneadou9602
@arseneadou9602 Жыл бұрын
Very good job. Please, the link oh the code
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
Thanks for watching! I have some technical issues with my blog / github. So, need to fix it soon. Please, check for new blog-articles later.
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
hey Arsène, the technical issues are solved, I splitted the code into two blog-posts: yuzar-blog.netlify.app/posts/2022-10-31-gtsummary/ yuzar-blog.netlify.app/posts/2022-11-25-gtsummary2/ Enjoy!
@arseneadou9602
@arseneadou9602 Жыл бұрын
@@yuzaR-Data-Science thank you very much Professor
@wagawsendeku7750
@wagawsendeku7750 Жыл бұрын
> amscr1 % select(CFS, EVS, IHS, Resistance) %>% + tbl_summary(by = Resistance) %>% + bold_labels() %>% + add_n() %>% + add_overall() %>% + add_ci() %>% + add_n() %>% + add_difference(method = "test", + test = list(method = "odds.ratio", + conf.level = 0.95)) Error in add_difference(., method = "test", test = list(method = "odds.ratio", : unused argument (method = "test")
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
I think you have to many argument inside of add_difference. Just google the function add_difference and learn about it more online. cheers
@fishfish20
@fishfish20 Жыл бұрын
Be blessed sir. I can't lie, I always come here to get packages. ☺ Thank you sir for the clear explanations.
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
Always welcome!
@tubihemukamamethodius6952
@tubihemukamamethodius6952 Жыл бұрын
One of the best videos of all time
@yuzaR-Data-Science
@yuzaR-Data-Science Жыл бұрын
Thanks a ton! :) Glad you enjoyed it. My other videos might also be useful, if you liked this one. Cheers
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