Rayan Chikhi | Hands-on introduction to pangenome graphs
Related papers:
1. Eizenga, J. M., Novak, A. M., Sibbesen, J. A., Heumos, S., Ghaffaari, A., Hickey, G., Chang, X., Seaman, J. D., Rounthwaite, R., Ebler, J., Rautiainen, M., Garg, S., Paten, B., Marschall, T., Sirén, J., & Garrison, E. (2020). Pangenome Graphs. Annual review of genomics and human genetics, 21, 139-162. doi.org/10.1146/annurev-genom...
2. Ekim, B., Berger, B., & Chikhi, R. (2021). Minimizer-space de Bruijn graphs: Whole-genome assembly of long reads in minutes on a personal computer. Cell systems, 12(10), 958-968.e6. doi.org/10.1016/j.cels.2021.0...
3. Guarracino, A., Heumos, S., Nahnsen, S., Prins, P., & Garrison, E. (2022). ODGI: understanding pangenome graphs. Bioinformatics (Oxford, England), 38(13), 3319-3326. Advance online publication. doi.org/10.1093/bioinformatic...
4. Computational graph pangenomics: a tutorial on data structures and their applications. link.springer.com/article/10....