Your tutoring really help but now I'm using ubunto and I'm stuck 😭

THANK YOU SO MUCH

Wonderful

Can I get the part 2 link please

i am unable to do the dockig. When I am adding to command prompt, it is showing access denied. How to resolve it?

how to download ligPlot? it shows that license is needed

Hello sir...when i took a drug molecule as ligand..i got warning tht exhaustiveness value is low..so i changed it to 16....and then got the result...will that be fine if i change the exhaustiveness value????

Thank you

Thank you.

Concept of ribbon and strands not explained

How to identical the sea domain located

If you don't have coding experience or a powerful computer, you can use QuandleLabs to run autodock vina

Sir can you make a video where a detailed description of network analysis is present. Or if you have already then please mention. It will be helpful for a beginner like me.

Thank you sir

sir, there is a problem arises in command prompt. the configuration file parse error it shows . please give the solution to this problem

🎉❤🎉😂🎉😂 nice 🎉❤🎉❤

it works after time goes down to zero ?

How you visualize it at the end??

Grateful for the one Sir. Amazing tutorial. Keep going!

Honestly I appreciate so much your video thank you

Hello, would you make a video of how to run SMD with gromacs?

Amazing video

how to generate dlg file from out.pdbqt

This is wonderful veido helpmed me alot. Can you prepare a vidio how to use Rosseta Design software?

I am not find exactly this website plz share a link

Im performing docking on a known active site so i limited the gridbox around the active site only. Some of the conformations i got after docking were outside the grid box. Is that normal?

sir I wanted to know..if the same thing can be executed in ubuntu system

I have a doubt. I guess The grid box has to be formed around the active site residues by changing the x, y and z axis values so that the interaction can be calculated correctly,

Do u provide notes

How to save this ligplot ?

sir before that do we need to prepare our protein by adding polar hydrogen bond and removing water molecules ,checking for missing element?

tkans a lot I from Uzbekistan

my protein file is not saving as the pdbqt so what should i do

my protein file is not saveing as the pdbqt so what should i do

thank you sir , you explained each and every step very clear .

i have done docking of protien and ligand with autodock 2.4.6 and now i want to do MD of it to check its stability, i dont know how to do that and charmm36 cannot be downloaded. Please help me

Sir can you please share the sequence and the output

Sir, I have a question is this interaction of the first pose out of the nine poses

one night before exam gang unite ✊🏼

This video series help me a lot

Sir, can we used ligand file prepared in autodock tool in Vina and what about energy minimization step?

i can't download CHARMM force field, the site is not working. do you have any other alternative?

No body mentions the importance of dock prep before uploading in clus pro. Is it not necessary?

Which is the first amino acid in the aligment

Sir plz tell me how to put double dash in comand promt

I am not able to download .py file for charmm force field. How can i get it?

How can calculate mmgbsa Please

Thankyou ❤

For which purpose we do MD simulation?