In this video, I will show you how to design primers to amplify the entire gene during a routine PCR.
Пікірлер: 86
@erikan.n84092 жыл бұрын
THANK YOU! I have a project where i need to design a primer and your video genuinely saved me and explained it suuuper well too!
@bernardojunqueira2392 Жыл бұрын
Same here. Thank you so much.
@polarisgemini524 жыл бұрын
FINALLY!. Exactly what I was looking for! Thank you!
@ermiyasshibesh33965 ай бұрын
...me too
@jonathandavid89324 жыл бұрын
This is the best explanation I have come across!! Thanks
@tahirm2573 жыл бұрын
Very informative. I am a beginner and this is what I was looking for. Thanks.
@sunnetinternationalbusines99104 жыл бұрын
Wow! this is just the answer to the questions I have been trying to ask. THank YOu
@user-yr2um6nz4h7 ай бұрын
The video is easy to comprehend and implement in primer design. Thank you for a job well done
@joklbeatrice14 жыл бұрын
Thank you! Great explaination! I have to do this for my homework and this is the first video that really helps! Thanks
@CatalystUniversity4 жыл бұрын
Thank you!
@joelfalowo35862 жыл бұрын
When you finished designing the primer how can we now use it for our PCR?
@ismaeelchohan82253 жыл бұрын
This is exactly what i needed, thank you so much
@gdyejrn5646197963 жыл бұрын
Thank you so much your perfect lesson of primer design!!
@LindseyNjanja3 жыл бұрын
I am so happy I found you!!
@deopranav32322 жыл бұрын
Really good explanation!! Helped a lot.
@ruthzafar72723 жыл бұрын
GOOD LECTURE 👍GOD BLESS YOU TEACHER 😊
@user-mm8cq9xg3m Жыл бұрын
Thank you so much for your video. I am wondering how we check the accuracy of the design primer. Is there any website like you mentioned in the video? I wanna see if my design has appropriate Tm, and GC content and no secondary branching.
@alanhassall4 жыл бұрын
From here you would have to deterimine the Tm for each and hope that they are close to each other for the PCR to work.
@onarmy80633 жыл бұрын
This is very helpful! Thank youu!
@babangapu81893 жыл бұрын
Your vids are concise and very simple to understand
@smartmail67882 жыл бұрын
its very helping to me.. i was looking for target gene forward and reverse primers form.published literature but it was lacking number of nucleotides and qPCR protocol for ea ch target gene.. the published literature only contain gene accession code where the origin gene sequenceing section can be obtained .. bu using available information in literature i could be able to design primer by learning this tutorial.. Thank u for sharing this Knowledge
@ahmadsanga30023 жыл бұрын
Well understood. Thank-you
@hiramaryam97523 жыл бұрын
Many thanks for video. 1. Primers you designed, how to get to know the annealing temperature of both primers and GC . 2. What is difference between full length primers and short length primers means why we do. For example one gene express in full length primer in semi-qPCR but in short length designed primer this isn't expressing.
@hlahla7217Ай бұрын
It is very useful for me , thank you so much
@erythreal77703 жыл бұрын
very helpful, thank you !
@mohammedal-issawi669012 күн бұрын
Thanks, that was helpful
@janggeumseo5924 жыл бұрын
Nice explanation, you helped me alot with my homework. Thanks very much!
@CatalystUniversity4 жыл бұрын
No problem!
@ankitasingh9614 жыл бұрын
@@CatalystUniversity can you hlp me
@ungkujuro4 жыл бұрын
THANK YOU LIFE SAVER
@smmbadawy14224 жыл бұрын
I could not find the description table I need the websites, please
@lakshmienarain57339 ай бұрын
Thank you very much!
@lovelyank24874 жыл бұрын
but how would you check for dimer formation ?
@funnygov3 жыл бұрын
Maybe add these links for sites in the description below of the video?
@khalidakram3 жыл бұрын
Hi, what app did you use to make the video - with the coloured pens on the right? What tool is this, please?
@leticiakabahumuza3 жыл бұрын
Thank you!
@divyavarshney62223 жыл бұрын
Thank you for this awesome vidoe. Can you please tell.me how can we check the orientation of DNA sequence. Please help
@KoalaKid233 ай бұрын
Hey there! Thanks for the video. What if the forward primer as described in the video contains GC and AT rich regions which are not desired? Or if they have suboptimal melting temperatures? Would one then have to search for other 20mers upstream and downstream of the gene to use instead of the start and stop regions as starting points for the 20mers? And how would we do that? Is there a tool for that also? Kind regards
@DrMortadhaSAbd3 жыл бұрын
Thank you so much, perfectly to the point. would you also please make a video on how to design a primer for SNP genotyping? or is it the same?!
@karinacaetano40163 жыл бұрын
Hi, did you find a video on this? Im interested in designing primers for SNP detection and I havent found any good information on this.
@DrMortadhaSAbd3 жыл бұрын
@@karinacaetano4016 no unfortunately, I think this kind of information is only given in paid courses and for free!
@aryaphatak55963 жыл бұрын
Can you put out some practice questions for us? Thank you
@divyamehul3 жыл бұрын
Thanks a lot❤
@hollandhoward7724 жыл бұрын
The link isnt working for me? Has anyone else had success and can post the link?
@kkhanthony85334 жыл бұрын
Thank you great video. But does your fp need reverse complement as well? Thxxx
@kkhanthony85334 жыл бұрын
And why u use 40mer so big? You need high accuracy?
@hamzaalati49594 жыл бұрын
we need to add the restriction site before the forward primer and reverse primer and we also need to add the stuffner nucleotides before the restriction site but do you have nay idea how many base pair we can add before the restriction site?
@vanessakuvarega89409 ай бұрын
I need to do a similar thing, just wondering how you worked this out?
@amogelangledwaba67363 ай бұрын
What about the quality of the primers are they any good in terms of the Tm and self complementary?
@ahmedawan59093 жыл бұрын
Sir I like your video I want to confirm that reverse primer is 3 to 5 direction or 5 to 3 direction please tell me?
@beenatb43552 жыл бұрын
Can we make the primer for whole gene for qPCR
@alanhassall4 жыл бұрын
Your reverse primer doesn't end with a C or a G. Would it work better if it was one base longer to get a better "3' clamp"?
@AF-qn9hc4 жыл бұрын
I think it’s better to have a GC end based on my research
@ahmedawan59093 жыл бұрын
Sir reverse primer is 3 to 5 direction or 5 to 3 direction please tell me the answer?
@sowmyahh64263 жыл бұрын
Hi, in the second method the forward primer is same as template sequence, it should be complementary if it has to go and bind to template strand, how it's gonna work?
@bhagatsingh63453 жыл бұрын
primer also recognised to 3' prime end and DNA Pol 5' to 3'.
@DavidBlazC3 жыл бұрын
@@bhagatsingh6345 im sorry, but could you please elaborate more ? i couldnt seem to understand how the forward primer will bind even if its read the other way
@dibyanshusekharmohapatra9929 Жыл бұрын
Exactly my question
@kaleemullahmarwat12073 жыл бұрын
Why we need partial sequences whlie designing of primer?
@christylee55453 жыл бұрын
Why use complementary sequence for RP but not for FP..??
@umairameer67283 жыл бұрын
Why Forward primer sequence remains same as complementary strand ?
@kvnkvn919111 ай бұрын
Because DNA polymerase adds chain 5' to 3' so first replication starts with reverse primer. If we want to copy newly formed chain it's complementary to it (actually it's same as original code) Just imagine how PCR works and you will understand
@zainabvaseem22433 жыл бұрын
Where are the links ????
@Philosophyof2 жыл бұрын
But how will you check if there are off-target amplification?
@adeelabbasi73753 жыл бұрын
perfect
@halafr58613 жыл бұрын
Thanks 😊
@CatalystUniversity3 жыл бұрын
You're welcome!
@abrown65399 ай бұрын
I don't understand what the "optimized" primers are. What are they optimized FOR?
@shubhamtiwari9153 жыл бұрын
I just did my question paper with your explanation if I don't get marks I m going to hunt you down 😂😛
@kathrinamaebienes33473 жыл бұрын
Does this apply for RT-PCR as well? Template is an RNA virus.
@mebratuify Жыл бұрын
Where you brought these genes first?
@ahmedawan59093 жыл бұрын
In the video why forward and reverse primer has same 5 prime to 3 prime direction
@MrMyfra6 ай бұрын
Great, but did not explain why the Primer -Blast did not work and you had to use another tool? also why did you not specifiy amplification ranges in the primer blast?
@rizwanashraf73514 жыл бұрын
how to design probe
@blacksheepmoan76792 жыл бұрын
How about a link to those websites? Wouldn't that be useful...
@erhunmwuseifueko64744 жыл бұрын
for the reverse primer, why did you not change the 5 prime to 3 prime and 3 prime to 5 prime.i actually thought you forgot to do that.
@ismailgbadamosi83213 жыл бұрын
It is a reverse complement, so it is running from 5 to 3 on the complementary strand
@deepakkaushik68213 жыл бұрын
But amplification of large gene with only one primer isn't trustworthy or may have incorrect base sequence
@drdeiceekay686511 ай бұрын
Why cant we get people like this in universitys?
@lacy71x352 жыл бұрын
When they say "it lacks the primer for reverse transcriptase" ... uhm, it can make its own!
@Elif-eo5dn2 жыл бұрын
Hey can I send you a message ?
@vanzweedenart3 жыл бұрын
The start-point and endpoint of a desired DNA-sequence does not provide necessarily a suitable set of primers. In most cases, it does not. (Selfdimers, wrong amount of Cytosines en Guanines. CG-amount should be around 60%)
@jenniferdrohan91372 жыл бұрын
How do you mitigate against this?
@walter8206 Жыл бұрын
what
@iamonthecan122 жыл бұрын
Your explanation for the forward primer makes no sense tbh. How is that primer going to attach to the first 20 base pair sequences of that strand when it's the exact same and isn't a reverse compliment?