Biotechniques | Principles of Primer Design for Full Gene Amplification

  Рет қаралды 116,087

Catalyst University

Catalyst University

Күн бұрын

In this video, I will show you how to design primers to amplify the entire gene during a routine PCR.

Пікірлер: 86
@erikan.n8409
@erikan.n8409 2 жыл бұрын
THANK YOU! I have a project where i need to design a primer and your video genuinely saved me and explained it suuuper well too!
@bernardojunqueira2392
@bernardojunqueira2392 Жыл бұрын
Same here. Thank you so much.
@polarisgemini52
@polarisgemini52 4 жыл бұрын
FINALLY!. Exactly what I was looking for! Thank you!
@ermiyasshibesh3396
@ermiyasshibesh3396 5 ай бұрын
...me too
@jonathandavid8932
@jonathandavid8932 4 жыл бұрын
This is the best explanation I have come across!! Thanks
@tahirm257
@tahirm257 3 жыл бұрын
Very informative. I am a beginner and this is what I was looking for. Thanks.
@sunnetinternationalbusines9910
@sunnetinternationalbusines9910 4 жыл бұрын
Wow! this is just the answer to the questions I have been trying to ask. THank YOu
@user-yr2um6nz4h
@user-yr2um6nz4h 7 ай бұрын
The video is easy to comprehend and implement in primer design. Thank you for a job well done
@joklbeatrice1
@joklbeatrice1 4 жыл бұрын
Thank you! Great explaination! I have to do this for my homework and this is the first video that really helps! Thanks
@CatalystUniversity
@CatalystUniversity 4 жыл бұрын
Thank you!
@joelfalowo3586
@joelfalowo3586 2 жыл бұрын
When you finished designing the primer how can we now use it for our PCR?
@ismaeelchohan8225
@ismaeelchohan8225 3 жыл бұрын
This is exactly what i needed, thank you so much
@gdyejrn564619796
@gdyejrn564619796 3 жыл бұрын
Thank you so much your perfect lesson of primer design!!
@LindseyNjanja
@LindseyNjanja 3 жыл бұрын
I am so happy I found you!!
@deopranav3232
@deopranav3232 2 жыл бұрын
Really good explanation!! Helped a lot.
@ruthzafar7272
@ruthzafar7272 3 жыл бұрын
GOOD LECTURE 👍GOD BLESS YOU TEACHER 😊
@user-mm8cq9xg3m
@user-mm8cq9xg3m Жыл бұрын
Thank you so much for your video. I am wondering how we check the accuracy of the design primer. Is there any website like you mentioned in the video? I wanna see if my design has appropriate Tm, and GC content and no secondary branching.
@alanhassall
@alanhassall 4 жыл бұрын
From here you would have to deterimine the Tm for each and hope that they are close to each other for the PCR to work.
@onarmy8063
@onarmy8063 3 жыл бұрын
This is very helpful! Thank youu!
@babangapu8189
@babangapu8189 3 жыл бұрын
Your vids are concise and very simple to understand
@smartmail6788
@smartmail6788 2 жыл бұрын
its very helping to me.. i was looking for target gene forward and reverse primers form.published literature but it was lacking number of nucleotides and qPCR protocol for ea ch target gene.. the published literature only contain gene accession code where the origin gene sequenceing section can be obtained .. bu using available information in literature i could be able to design primer by learning this tutorial.. Thank u for sharing this Knowledge
@ahmadsanga3002
@ahmadsanga3002 3 жыл бұрын
Well understood. Thank-you
@hiramaryam9752
@hiramaryam9752 3 жыл бұрын
Many thanks for video. 1. Primers you designed, how to get to know the annealing temperature of both primers and GC . 2. What is difference between full length primers and short length primers means why we do. For example one gene express in full length primer in semi-qPCR but in short length designed primer this isn't expressing.
@hlahla7217
@hlahla7217 Ай бұрын
It is very useful for me , thank you so much
@erythreal7770
@erythreal7770 3 жыл бұрын
very helpful, thank you !
@mohammedal-issawi6690
@mohammedal-issawi6690 12 күн бұрын
Thanks, that was helpful
@janggeumseo592
@janggeumseo592 4 жыл бұрын
Nice explanation, you helped me alot with my homework. Thanks very much!
@CatalystUniversity
@CatalystUniversity 4 жыл бұрын
No problem!
@ankitasingh961
@ankitasingh961 4 жыл бұрын
@@CatalystUniversity can you hlp me
@ungkujuro
@ungkujuro 4 жыл бұрын
THANK YOU LIFE SAVER
@smmbadawy1422
@smmbadawy1422 4 жыл бұрын
I could not find the description table I need the websites, please
@lakshmienarain5733
@lakshmienarain5733 9 ай бұрын
Thank you very much!
@lovelyank2487
@lovelyank2487 4 жыл бұрын
but how would you check for dimer formation ?
@funnygov
@funnygov 3 жыл бұрын
Maybe add these links for sites in the description below of the video?
@khalidakram
@khalidakram 3 жыл бұрын
Hi, what app did you use to make the video - with the coloured pens on the right? What tool is this, please?
@leticiakabahumuza
@leticiakabahumuza 3 жыл бұрын
Thank you!
@divyavarshney6222
@divyavarshney6222 3 жыл бұрын
Thank you for this awesome vidoe. Can you please tell.me how can we check the orientation of DNA sequence. Please help
@KoalaKid23
@KoalaKid23 3 ай бұрын
Hey there! Thanks for the video. What if the forward primer as described in the video contains GC and AT rich regions which are not desired? Or if they have suboptimal melting temperatures? Would one then have to search for other 20mers upstream and downstream of the gene to use instead of the start and stop regions as starting points for the 20mers? And how would we do that? Is there a tool for that also? Kind regards
@DrMortadhaSAbd
@DrMortadhaSAbd 3 жыл бұрын
Thank you so much, perfectly to the point. would you also please make a video on how to design a primer for SNP genotyping? or is it the same?!
@karinacaetano4016
@karinacaetano4016 3 жыл бұрын
Hi, did you find a video on this? Im interested in designing primers for SNP detection and I havent found any good information on this.
@DrMortadhaSAbd
@DrMortadhaSAbd 3 жыл бұрын
@@karinacaetano4016 no unfortunately, I think this kind of information is only given in paid courses and for free!
@aryaphatak5596
@aryaphatak5596 3 жыл бұрын
Can you put out some practice questions for us? Thank you
@divyamehul
@divyamehul 3 жыл бұрын
Thanks a lot❤
@hollandhoward772
@hollandhoward772 4 жыл бұрын
The link isnt working for me? Has anyone else had success and can post the link?
@kkhanthony8533
@kkhanthony8533 4 жыл бұрын
Thank you great video. But does your fp need reverse complement as well? Thxxx
@kkhanthony8533
@kkhanthony8533 4 жыл бұрын
And why u use 40mer so big? You need high accuracy?
@hamzaalati4959
@hamzaalati4959 4 жыл бұрын
we need to add the restriction site before the forward primer and reverse primer and we also need to add the stuffner nucleotides before the restriction site but do you have nay idea how many base pair we can add before the restriction site?
@vanessakuvarega8940
@vanessakuvarega8940 9 ай бұрын
I need to do a similar thing, just wondering how you worked this out?
@amogelangledwaba6736
@amogelangledwaba6736 3 ай бұрын
What about the quality of the primers are they any good in terms of the Tm and self complementary?
@ahmedawan5909
@ahmedawan5909 3 жыл бұрын
Sir I like your video I want to confirm that reverse primer is 3 to 5 direction or 5 to 3 direction please tell me?
@beenatb4355
@beenatb4355 2 жыл бұрын
Can we make the primer for whole gene for qPCR
@alanhassall
@alanhassall 4 жыл бұрын
Your reverse primer doesn't end with a C or a G. Would it work better if it was one base longer to get a better "3' clamp"?
@AF-qn9hc
@AF-qn9hc 4 жыл бұрын
I think it’s better to have a GC end based on my research
@ahmedawan5909
@ahmedawan5909 3 жыл бұрын
Sir reverse primer is 3 to 5 direction or 5 to 3 direction please tell me the answer?
@sowmyahh6426
@sowmyahh6426 3 жыл бұрын
Hi, in the second method the forward primer is same as template sequence, it should be complementary if it has to go and bind to template strand, how it's gonna work?
@bhagatsingh6345
@bhagatsingh6345 3 жыл бұрын
primer also recognised to 3' prime end and DNA Pol 5' to 3'.
@DavidBlazC
@DavidBlazC 3 жыл бұрын
@@bhagatsingh6345 im sorry, but could you please elaborate more ? i couldnt seem to understand how the forward primer will bind even if its read the other way
@dibyanshusekharmohapatra9929
@dibyanshusekharmohapatra9929 Жыл бұрын
Exactly my question
@kaleemullahmarwat1207
@kaleemullahmarwat1207 3 жыл бұрын
Why we need partial sequences whlie designing of primer?
@christylee5545
@christylee5545 3 жыл бұрын
Why use complementary sequence for RP but not for FP..??
@umairameer6728
@umairameer6728 3 жыл бұрын
Why Forward primer sequence remains same as complementary strand ?
@kvnkvn9191
@kvnkvn9191 11 ай бұрын
Because DNA polymerase adds chain 5' to 3' so first replication starts with reverse primer. If we want to copy newly formed chain it's complementary to it (actually it's same as original code) Just imagine how PCR works and you will understand
@zainabvaseem2243
@zainabvaseem2243 3 жыл бұрын
Where are the links ????
@Philosophyof
@Philosophyof 2 жыл бұрын
But how will you check if there are off-target amplification?
@adeelabbasi7375
@adeelabbasi7375 3 жыл бұрын
perfect
@halafr5861
@halafr5861 3 жыл бұрын
Thanks 😊
@CatalystUniversity
@CatalystUniversity 3 жыл бұрын
You're welcome!
@abrown6539
@abrown6539 9 ай бұрын
I don't understand what the "optimized" primers are. What are they optimized FOR?
@shubhamtiwari915
@shubhamtiwari915 3 жыл бұрын
I just did my question paper with your explanation if I don't get marks I m going to hunt you down 😂😛
@kathrinamaebienes3347
@kathrinamaebienes3347 3 жыл бұрын
Does this apply for RT-PCR as well? Template is an RNA virus.
@mebratuify
@mebratuify Жыл бұрын
Where you brought these genes first?
@ahmedawan5909
@ahmedawan5909 3 жыл бұрын
In the video why forward and reverse primer has same 5 prime to 3 prime direction
@MrMyfra
@MrMyfra 6 ай бұрын
Great, but did not explain why the Primer -Blast did not work and you had to use another tool? also why did you not specifiy amplification ranges in the primer blast?
@rizwanashraf7351
@rizwanashraf7351 4 жыл бұрын
how to design probe
@blacksheepmoan7679
@blacksheepmoan7679 2 жыл бұрын
How about a link to those websites? Wouldn't that be useful...
@erhunmwuseifueko6474
@erhunmwuseifueko6474 4 жыл бұрын
for the reverse primer, why did you not change the 5 prime to 3 prime and 3 prime to 5 prime.i actually thought you forgot to do that.
@ismailgbadamosi8321
@ismailgbadamosi8321 3 жыл бұрын
It is a reverse complement, so it is running from 5 to 3 on the complementary strand
@deepakkaushik6821
@deepakkaushik6821 3 жыл бұрын
But amplification of large gene with only one primer isn't trustworthy or may have incorrect base sequence
@drdeiceekay6865
@drdeiceekay6865 11 ай бұрын
Why cant we get people like this in universitys?
@lacy71x35
@lacy71x35 2 жыл бұрын
When they say "it lacks the primer for reverse transcriptase" ... uhm, it can make its own!
@Elif-eo5dn
@Elif-eo5dn 2 жыл бұрын
Hey can I send you a message ?
@vanzweedenart
@vanzweedenart 3 жыл бұрын
The start-point and endpoint of a desired DNA-sequence does not provide necessarily a suitable set of primers. In most cases, it does not. (Selfdimers, wrong amount of Cytosines en Guanines. CG-amount should be around 60%)
@jenniferdrohan9137
@jenniferdrohan9137 2 жыл бұрын
How do you mitigate against this?
@walter8206
@walter8206 Жыл бұрын
what
@iamonthecan12
@iamonthecan12 2 жыл бұрын
Your explanation for the forward primer makes no sense tbh. How is that primer going to attach to the first 20 base pair sequences of that strand when it's the exact same and isn't a reverse compliment?
@C4Cartoon2
@C4Cartoon2 Жыл бұрын
Sir I wanna a contact you I need you help ...
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