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The principle of Real Time PCR, Reverse Transcription, quantitative rt-PCR

  Рет қаралды 667,896

Biomedical and Biological Sciences

Biomedical and Biological Sciences

Күн бұрын

Пікірлер: 534
@sherylrodriguez2574
@sherylrodriguez2574 5 жыл бұрын
Good video! just a quick comment to clarify that RT-PCR is Reverse Transcription PCR and Real Time PCR is Q-PCR, for Quantitative PCR, to avoid confusion. Thanks for your video! It was helpful
@Biomeducated
@Biomeducated 4 жыл бұрын
Her videos are awesome! That's the reason I've put her in my '10 Biomedical Science Channels to watch' video on my own channel! Just a pity she doesn't upload anymore :( Hope for a revival!
@aparnasrivastava8064
@aparnasrivastava8064 4 жыл бұрын
Good explanation
@dranshumansahu6114
@dranshumansahu6114 4 жыл бұрын
Biomed Master yeah but small blunders.....she need to improve that......and she’ll become best
@mrlawilliamsukwarmachine4904
@mrlawilliamsukwarmachine4904 3 жыл бұрын
Intetesting!
@rickscheck5330
@rickscheck5330 3 жыл бұрын
" RT-PCR is Reverse Transcription PCR" That's what I thought. She says "Real Time" So what's the difference?
@manuelmendez9372
@manuelmendez9372 7 жыл бұрын
I came here crying due to I couldn't understand my class today. I left loving RT PCR. Amazing work! Thank you so so muuuuch!
@biomedicalandbiologicalsci4989
@biomedicalandbiologicalsci4989 7 жыл бұрын
Thank you for your comment, it makes me happy o hear that :)
@Calbishi1
@Calbishi1 5 жыл бұрын
Yes, Manuel, very handy and great video! Will help our QFT team for sure
@Plantshealth
@Plantshealth 5 жыл бұрын
@@biomedicalandbiologicalsci4989 Egyptians are making good videos.
@jsingh265
@jsingh265 3 жыл бұрын
@@biomedicalandbiologicalsci4989 amazing. Your videos still having big impact.
@antonioassis7981
@antonioassis7981 6 жыл бұрын
Seriously, your video is totally amazing. What you have shown here, I guarantee you, most people from the field doesn't know. Just one little insignificant correction, cDNA means "complementary DNA" and don't "circle DNA".
@mehwisha.salman5517
@mehwisha.salman5517 3 жыл бұрын
She said cyclic not circle
@stanleyho8009
@stanleyho8009 2 жыл бұрын
@@mehwisha.salman5517 still wrong
@stanleyho8009
@stanleyho8009 2 жыл бұрын
I’m actually surprised… I’m first year university student and following the course biotechnology and society in the Netherlands and this came by real fast that I forgot exactly what is was so I looked it up again. I cannot imagine people in the field at least a lot of them not knowing about this if they specialize in this field,
@reindorfboateng7230
@reindorfboateng7230 3 жыл бұрын
This 5 years ago video has provided me with great knowledge and insight. Thank you very much for the clear and detailed explanation
@Tony_Ss-bx2dp
@Tony_Ss-bx2dp 4 жыл бұрын
It is an amazing video! thanks a lot for this explanation. Just one correction; cDNA is for "complementary" not for "cyclic" (22:04). Great job!
@yashkarmarkar8056
@yashkarmarkar8056 4 жыл бұрын
This is the most logical progression for someone who's looking to understand PCR. Really well structured content, big up!
@DM-xq3qg
@DM-xq3qg 7 жыл бұрын
your channel deserves more views! i could not have done well at university without you
@biomedicalandbiologicalsci4989
@biomedicalandbiologicalsci4989 7 жыл бұрын
Thank youu .. this really makes me happy :)
@AqleemAbbas
@AqleemAbbas 3 жыл бұрын
@@biomedicalandbiologicalsci4989 Hello Madam, Why have you stopped making videos? Continue please
@farshidyekani3957
@farshidyekani3957 3 жыл бұрын
Good presentation .. Just an important point: cDNA is Not cyclic DNA, It's Called Complementary DNA.
@adityatayde98
@adityatayde98 3 жыл бұрын
Thanks for correction
@boinualizeh4877
@boinualizeh4877 3 жыл бұрын
Yes👍
@archanar9676
@archanar9676 2 жыл бұрын
Good presentation
@naveedahmed8544
@naveedahmed8544 2 жыл бұрын
@@boinualizeh4877 good
@educationinfo5080
@educationinfo5080 Жыл бұрын
Means this cDNA undergoes this cyclic reaction so one can say.
@dryounisrather7855
@dryounisrather7855 2 жыл бұрын
i am not a molecular biologist but i can follow and understand your lecture easily, now i can interpret the COVID19 RT-PCR diagnostic result just looking at the curves and figuring out CT value quite easily, thanks and keep sharing knowledge
@selinunsalserbes4587
@selinunsalserbes4587 4 жыл бұрын
A correction: the reason of becoming non-exponential phase means there is no more reaction components anymore ( dna pol, dntps etc. run out). The explanation of becoming non-exponential phase is not dna polimerase becomes inactive. By the way, that is a great video, thank you!
@Mprince6588
@Mprince6588 Жыл бұрын
dna pol running out? can an enzyme run out that way? my course teacher said two reasons for the non-exponential phase- 1. gradual thermal inactivation of DNA pol after each denaturation step 2. reduced efficiency of primer annealing (due to increasing competition from the template)
@austinmiles5818
@austinmiles5818 6 жыл бұрын
This is absolutely incredible. Just what I needed for a presentation next week.
@biomedicalandbiologicalsci4989
@biomedicalandbiologicalsci4989 6 жыл бұрын
HAHAHA, very good. Hope you put my channel as a reference :p
@VLAREZENDE1983
@VLAREZENDE1983 4 жыл бұрын
Biomedical and Biological Sciences I hope too! Very good informations in you video!
@monaalbalawi6470
@monaalbalawi6470 2 жыл бұрын
@@biomedicalandbiologicalsci4989 can i have this presentation as a file?
@munerhd6095
@munerhd6095 3 жыл бұрын
Omg thank you soooooo much so much 😭 do you know how many times i tried to understand and looking for videos seeking god to understand this pain in the neck machine?!!! You’re awesome I finally understand it again thank you so much my savior 🥺💕
@danial17011
@danial17011 4 жыл бұрын
I have to admit, pretty impressive ability to comunicate, you really made it cristal clear despite english not being your first language. Thank you very much!
@abhayiyer8864
@abhayiyer8864 5 жыл бұрын
U explain well. I didn't understand RT PCR for my course. Now I understand it. U have great teaching talent.
@cyrtcheu2052
@cyrtcheu2052 3 жыл бұрын
This video is very good, very absorbing, you explained this methods simply and precisely. The only thing I can say is that SYBR green instead of Cyber green. It's very interesting.
@adlesal24
@adlesal24 Жыл бұрын
You are magnificent. You do not leave any point without detailed explanation. God blessings ❤
@Zweileiter
@Zweileiter 6 жыл бұрын
great video! I already have a Master in Biologie, but never was interested so much in molecular biologie and I totaly get everything about qPCR now! Thanks!!!
@enricocalvanese8223
@enricocalvanese8223 6 жыл бұрын
I wish you had more views. You are such a good lecturer and I am really grateful for your time in uploading these videos!
@nandinipriyathangavel8293
@nandinipriyathangavel8293 4 жыл бұрын
Thank you madam for your awesome explanation....first I didn't understand the rt PCR before now I'm clear in this topic ...once again thank you madam
@hanazahra1014
@hanazahra1014 3 жыл бұрын
The doctor said that my parent's CT value needs to be at certain number for them to be able to leave the hospital. I have no idea what it was all about. I came here without any medical knowledge, but your explanation in the video is very good and clear. I don't really understand the biological details but i get the concept of how it works. Thankyou thankyou!!!
@S.Ghosh_221
@S.Ghosh_221 2 жыл бұрын
CT value is the threshold value of fluorescence emitted. More than the CT value means the "gene of interest" (pathogenic gene of virus) has been ascertained. If it's less or nil, then the individual may clinically be diagnosed as "free of the viral infection/disease "
@ilaydademir228
@ilaydademir228 4 жыл бұрын
all mechanisms explained clearly! no insignificant details, just the main points, thank you : )
@onzimadaniel3747
@onzimadaniel3747 Жыл бұрын
Haven't seen such a complete and educative video!!! Thank you.
@Sturdy_Penguin
@Sturdy_Penguin 5 жыл бұрын
This is such a helpful video. Thank you so much for it. The only thing I noticed, was the use of "probability" instead of "possibility" at 17:38, where "probability" means "very likely", in this context. English is weird, sometimes, I know. But right. Your video was extremely helpful and the concept of rtPCR is very interesting. I'm glad it's so simple, too, as I have to be able to do it really soon.
@amitkhatti6807
@amitkhatti6807 6 жыл бұрын
Your lecture clarifies many doubts and basics of PCR for me. I highly obliged to your efforts. Still, I have couple of queries. 1. What is actual meaning of Ct value and delta Ct? 2. Many a time, Why we use RNA sample to synthesize c-DNA instead of direct DNA sample for RT-PCR?
@sameirbasnet3102
@sameirbasnet3102 2 жыл бұрын
For your second query, for instance in case of covid 19 virus detection we have to use reverse transcriptase pcr because it is a rna virus. So it all depends on what type of nucleic acid you won't to detect
@tianecheverry4123
@tianecheverry4123 3 жыл бұрын
A really helpful video but I think that it is SYBR Green not Cyber green, it really helps me to clarify some doubts that I had thank you so much, by the last qPCR: IS REAL-TIME PCR and RT-PCR: is REVERSE TRANSCRIPTION PCR.
@allisonsmith5115
@allisonsmith5115 5 жыл бұрын
Wow started doing qPCR two days ago and I don’t really know what I am doing but this video really clarified a lot. Thanks. You should make a video about analyzing qPCR data using a reference gene along with a target gene. Would really appreciate that!
@stianborg-stoveland661
@stianborg-stoveland661 6 жыл бұрын
Thank you! I needed to refresh this topic, and you covered it all, good job!
@Jose89277
@Jose89277 4 жыл бұрын
an important component for the reaction preparation was missing. The salt buffer. Without optimal pH-value and corresponding divalent cations the polymerase would not work properly at all
@anthonyvillarama6806
@anthonyvillarama6806 5 жыл бұрын
Awesome. Your presentation and explanation are clear. The best lecture out there. Keep your lectures coming.
@sametcirik4278
@sametcirik4278 3 жыл бұрын
Finally I could understand the key information thanks to this video after days of another mixed incomprehensible video. Please keep doing this. Congr. 👏👏👏
@jimfarey
@jimfarey 5 жыл бұрын
Watched this with my girlfriend, thoroughly enjoyed it. She's doing PhD genetics, I was a biochemist 15 years ago. Can I just add some constructive criticism on the language clarity front: "quencher" is pronounced "kwencher", as in "to quench", like when you're thirsty. As an Englishman, I feel I should apologise for our impossible language, your English is very very good!! Also, parent ssDNA is not copied by Taq polymerase/TaqMan, it is extended. The slide makes sense, just not the word "copy" in this context. Keep up the fantastic educational work! I learned something today :)
@drmarium
@drmarium 5 жыл бұрын
Its your* English. Not "you're" English :)
@jimfarey
@jimfarey 5 жыл бұрын
@@drmarium correct. It's also "it's", not possessive "its". :)
@benjaminsulemankurya6664
@benjaminsulemankurya6664 3 жыл бұрын
You are an excellent tutor, very clear message. I learnt things I could not understand from other videos.
@prembobby112
@prembobby112 2 жыл бұрын
More Useful video for Molecular biochemistry Research work...Thank you mam for your video ..
@JQPOINT
@JQPOINT 4 жыл бұрын
Your explanation is so succinct and understandable even for a non-scientist like me!
@trantuantu4906
@trantuantu4906 3 жыл бұрын
This video provides an easy way to understand RT-PCR and real time PCR. Thanks! Hope you can provide more video, and many people can access this page.
@sandalirashmi8195
@sandalirashmi8195 2 жыл бұрын
I dnt know how to say thank you.... i have no words.....😥😥😥 you are amazing...and this is a wonderful video, i watched more videos of you, thank you sooo much n god bless you♥️♥️♥️
@erfanhatami7040
@erfanhatami7040 5 жыл бұрын
this is the first time i got what rt-pcr is.thanks a lot
@thummalaharish5588
@thummalaharish5588 4 жыл бұрын
Nice effort in giving information to the beginners and even the experts. Thanks for the video
@qaisarsbiology5267
@qaisarsbiology5267 3 жыл бұрын
Thank you so much miss for a such a useful and simple explanation. 15:34 you mentioned the annealing and extension occur in 3 to 5' direction while hitting the fluorescence. I think this process is from 5 to 3" but tell us about the position of the probe in case of 5 to 3. thank you so much we really appreciate your work mam. This is the first video I have seen with such an amazing animated explanation.
@Analysis-Zone
@Analysis-Zone 2 жыл бұрын
This what i am looking for. Thank you for your effort and nice presentation...
@terrie001
@terrie001 7 жыл бұрын
Thanks for the video, I have several questions - I just got a job in the Molecular Hematology lab and needs to learn PCRs in details. Why would someone wants to do real time PCR, like why do you need to know how much DNA is made at a particular time, wouldn't the final measure after - say an hour would be sufficient? So the purpose of the reverse transcription PCR is to measure gene expression. The reason you do RT rather than just PCR is because you want to measure the mRNA (post transcription) rather than DNA (pre transcription - which doesn't tell you if the gene will be transcribed or not), right? Lastly, my lab is really concern about contamination. They even have separate room for Pre-PCR and Post-PCR. They do not allow anything, and I mean ANYTHING, including cell phone or pipette tips from the Post go to the Pre room. Like it can contaminate through air or something? I've never done any PCR before, all I learn is from textbooks.
@miangulhilal6858
@miangulhilal6858 6 жыл бұрын
Outstanding job very informative and easy explanation of difficult thoughts many thanks for your knowledge sharing
@Molecular_Machine
@Molecular_Machine 6 жыл бұрын
Another wonderful, informative and concise video, as always. Keep going
@irinasegovia4900
@irinasegovia4900 5 жыл бұрын
Clear and simple explanation. Thank you and keep up the great videos.
@mebriezemene9250
@mebriezemene9250 6 жыл бұрын
Thank you very much It is a nice video with a great explanation. It is helpful to me
@ahmedel-wakeel9365
@ahmedel-wakeel9365 7 жыл бұрын
Great work :) We need some videos about Flow Cytometer :)
@oluwashinaabiodun3667
@oluwashinaabiodun3667 7 жыл бұрын
well explained in the simplest form ever! Kudos
@shariquemf129
@shariquemf129 3 жыл бұрын
The way u try to make us understand is just lovely.. thanks for the video and explaination 🙏🙏❤️
@Gigis1111
@Gigis1111 3 жыл бұрын
Well done. The best explanation I could find!
@rubaithasan8911
@rubaithasan8911 5 жыл бұрын
EXCELLENT .......... very easy to understand..........good job
@ponrajarajan
@ponrajarajan 4 жыл бұрын
Clarity in ur presentation. I enjoyed it.
@SaraTahaFPTU
@SaraTahaFPTU 2 жыл бұрын
Thank you for the very informative video. Easy to understand and to listen to your English accent. and very great presentation skills. Thanks a lot
@drsaimairam15
@drsaimairam15 7 жыл бұрын
no doubt its an excellent presentation about RT-PCR
@kli7867
@kli7867 3 жыл бұрын
Amazing video. It is very detailed. was an undergrad, i didnot know the difference between cyber green and taqman. And then in conferences, I didnot understand why Ct in everyone's y axis.
@GamingAmbienceLive
@GamingAmbienceLive 3 жыл бұрын
Very good video you did an amazing job simple and doesn’t miss important details, but doesn’t go into an unnecessary amount of detail.
@mehwisha.salman5517
@mehwisha.salman5517 3 жыл бұрын
You are amazing it took me years to understand ft pcr. But you did it in few minutes
@AhmedSaad-om9vf
@AhmedSaad-om9vf 4 жыл бұрын
Thank you for this amazing video , really i gain great knowledge about qpcr this due to you amazing lecture , i am looking forward to more lessons
@1stPrimadonna
@1stPrimadonna 2 жыл бұрын
Thank you very much for this video ! You explian very clear and easy to follow. Hope you keep doing this
@poojautekar1446
@poojautekar1446 4 жыл бұрын
Great explanation... And significant points covered... Keep uploading such videos.. looking forward to it...
@rahi007biologytomicrobiolo5
@rahi007biologytomicrobiolo5 3 жыл бұрын
Very well explained, will be helpfull to understand the basics of RT PCR, Thank you
@theivun
@theivun 5 жыл бұрын
You are the Bioanalysis queen!
@mahdisalh7179
@mahdisalh7179 4 жыл бұрын
Thank you very much Today I understood real time PCR ( nice and simplified explanation) thank you so much
@guglielmovesco676
@guglielmovesco676 4 жыл бұрын
Thank you very much for this video! This is a very clear explanation. One question: could the non exponential plateau phase also due to the fact that all of fluorophore molecules are separated from their quenchers?
@ibrarahmed3761
@ibrarahmed3761 6 жыл бұрын
Very good explanation of the process in general. Just a comment that the plateau phase or non-exponential phase is not due to inactivation of DNA polymerase but due to the concentration of the fluorescent dye reaching beyond maximum detection limit. Say for example, you can lit a dark room, and the light will illuminate the room. Keep on increasing the number of lights, and the room will glow more and more until it will reach a saturation point beyond which no increase in light intensity will be visible even by doubling the number of lights. So if the room reaches at full saturation point with 50 lights, increasing the number of lights to 100 or 500 will have no more effects.
@audreyvanya5520
@audreyvanya5520 4 жыл бұрын
Thank you for such a simple and clear explanation between these two assays.
@sihaogao661
@sihaogao661 5 жыл бұрын
Thank you. Your explanation is very clear and the slides you made are awesome.
@priyankanaik1945
@priyankanaik1945 4 жыл бұрын
The amplification does not reach a plateau because the activity of polymerase decreases. It becomes stationery because the dNTPs and other building blocks of DNA get used up and there is nothing left to synthesize the DNA with.
@deveshmishra425
@deveshmishra425 5 жыл бұрын
Good Job. The Detector name is SYBR green, not Cyber Green
@aracelyabarcainostroza5190
@aracelyabarcainostroza5190 7 жыл бұрын
Thank you so much!!! it´s a really good explanation :)
@biomedicalandbiologicalsci4989
@biomedicalandbiologicalsci4989 7 жыл бұрын
Thank you for the nice comment :)
@sagarvemula6800
@sagarvemula6800 5 жыл бұрын
Your step by step explanation is excellent Thank you
@manthansurkar471
@manthansurkar471 3 жыл бұрын
Nicely Explained, thanks!!
@Thawanratify
@Thawanratify 3 жыл бұрын
Hi! I’m so proud of myself because I understand that your explain! Very very thank you!😂😂😂
@swedd2
@swedd2 3 жыл бұрын
This is such an informative video! Very useful for a graduate course I'm considering reattempting. Cheers
@SouvikMukherjee72
@SouvikMukherjee72 7 жыл бұрын
Nice one! Can you please explain about how the melt curve looks like for NTC? and How Ct value is used to determine the amount of gene vis-a-vis housekeeping gene
@biomedicalandbiologicalsci4989
@biomedicalandbiologicalsci4989 6 жыл бұрын
The earlier the CT is (the earlier the amplification curve crosses the threshold line), the larger is the amount of gene at the beginning of the experiment ... you do not compare the gene of interest with the housekeeping gene, you compare the CT of the gene of interest in different samples. The housekeeping gene is a gene that is expressed similarly in all the samples so we are sure that all the samples exist in the same amount. In other words, the CT of the housekeeping gene should be the same in all the samples, otherwise, your experiment is not precise. I hope I answered your question ...
@LuizFernando-le3vh
@LuizFernando-le3vh 3 жыл бұрын
Amazing! I am from Brazil and your explanation does an accessible language (I do not speak English very well). Congratulations on your class. (I use google translate legend kkkk)
@abubakarsaidumshelia550
@abubakarsaidumshelia550 4 жыл бұрын
This is Apt and Well Explained. Many Thanks.
@hamzausman4729
@hamzausman4729 4 жыл бұрын
Your method of teaching is very good...please give a lecture on somaclonal variation
@luain.muhammad
@luain.muhammad 5 жыл бұрын
It was really very beautiful video and also your accent was so nice. Thanks a lot.
@dembrowi_n_c.5111
@dembrowi_n_c.5111 5 жыл бұрын
Should we tell her it's SYBR green not Cyber green?
@TangkamCornerUK
@TangkamCornerUK 4 жыл бұрын
Indeed bro.
@imbrother1
@imbrother1 4 жыл бұрын
cyber green sounds cooler.
@edwingreen6439
@edwingreen6439 3 жыл бұрын
Yes
@ahmedabdelhadi5597
@ahmedabdelhadi5597 3 жыл бұрын
also cDNA it’s a complementary DNA not cyclic DNA
@Padmashrinaren
@Padmashrinaren 2 жыл бұрын
This was such a life saver 🤧🤧❤❤❤🤧🤧
@medicineman786
@medicineman786 3 жыл бұрын
You are the best!
@noorulain7302
@noorulain7302 5 жыл бұрын
Good video really, love from Paklistan...........
@isaacclark9886
@isaacclark9886 3 жыл бұрын
Really awesome video. Super helpful in clarifying this concept for me. Thank you!
@pritichristian2673
@pritichristian2673 2 жыл бұрын
Very detailed explanation and vedio. Thanks
@LuisGalindo0
@LuisGalindo0 6 жыл бұрын
Hello and congratulations on your videos. I am very pleased with the amount of detail you were able to provide in such short time. Do you have plans to make a similar video about digital PCR? Greetings
@noornoor-ic4rg
@noornoor-ic4rg 7 жыл бұрын
Great simplified explanation...Thank you
@biomedicalandbiologicalsci4989
@biomedicalandbiologicalsci4989 7 жыл бұрын
welcome :)
@drashnatmou862
@drashnatmou862 3 жыл бұрын
Really helpful for refreshing the whole thing... Thank u so much...
@fauziaazzahra8578
@fauziaazzahra8578 5 жыл бұрын
Thank you so much, it helps me alot to understand about pcr.. You explained it well so it easier to understand 👍
@omaramin583
@omaramin583 4 жыл бұрын
Amaaazing work .. thank you very much ..keep it up
@jc-tu6pg
@jc-tu6pg 5 жыл бұрын
the way you say "quencher" is really cute
@yaqoobkhan8415
@yaqoobkhan8415 2 жыл бұрын
Informative video keep it up!
@mr.croninsvideos5202
@mr.croninsvideos5202 4 жыл бұрын
Great video! I do have a question, though (and if anyone can answer this, it would be helpful). At 21:20, you mentioned that you include RNAse in the mixture within the PCR tube. I understand that its purpose is to degrade the RNA transcript after it has been reverse transcribed into cDNA, but what is to prevent RNAse from degrading the RNA transcript before reverse transcriptase has had the opportunity to reverse transcribe it?
@NeelamnishanthreddyReddy
@NeelamnishanthreddyReddy 4 ай бұрын
here we are using RNase H it cleaves only the RNA-DNA hybrid then you get cDNA right
@khinpyae8356
@khinpyae8356 5 жыл бұрын
It would be a lot better if you finish your sentences and have fewer pauses. It is difficult to stay focused when you have lots of half sentences and pauses. Other than that, the explanation is top notch. (Y) Thank you!
@muhammadhafizsulaiman7163
@muhammadhafizsulaiman7163 3 жыл бұрын
You explain it well friend. Thank you so much.
@jishabose8682
@jishabose8682 2 жыл бұрын
Excellent presentation
@moazal-ghamdi9017
@moazal-ghamdi9017 5 жыл бұрын
Thank you so much. The presentation was so clear. Keep up the good work.
@rojfarhan9699
@rojfarhan9699 7 жыл бұрын
thank you for this explanation that was great yea i have some difficulty when i want to know the meaning and for what we can use the the real time pcr analysis section like RN delt rn and RQ ...... so on
@carolinec.picoli6849
@carolinec.picoli6849 5 жыл бұрын
Congratulations on the video, I found it well didactic.
@mahboobhossain7749
@mahboobhossain7749 4 жыл бұрын
This video cleared the principle of rtPCR
@mailaralingams7896
@mailaralingams7896 4 жыл бұрын
much informative and loved the way you make things much easier... here go I subscribed .. tqs keep on doing this work
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